* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/track.Rcheck’ * using R Under development (unstable) (2022-05-16 r82368) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘track/DESCRIPTION’ ... OK * this is package ‘track’ version ‘1.1.9’ * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘scriptests’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘track’ can be installed ... [12s/40s] OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [26s/64s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runtests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building ‘track.Rnw’ using Sweave Warning in track.start() : Have identical vars with same names in tracking db in "/data/gannet/ripley/R/packages/tests-LENGTH1/track.Rcheck/vign_test/track/vignettes/rdatadir" and in : '.Last' Warning in track.start() : Have identical vars with same names in tracking db in "/data/gannet/ripley/R/packages/tests-LENGTH1/track.Rcheck/vign_test/track/vignettes/rdatadir" and in : 'x', 'y', 'z1', 'z2' --- finished re-building ‘track.Rnw’ ----------- FAILURE REPORT -------------- --- failure: length > 1 in coercion to logical --- --- srcref --- : --- package (from environment) --- track --- call from context --- cb(expr, value, succeeded, visible, data) --- call from argument --- is.call(expr) && as.character(expr[[1]]) == "track.sync" --- R stacktrace --- where 1: cb(expr, value, succeeded, visible, data) --- value of length: 3 type: logical --- [1] FALSE FALSE FALSE --- function from context --- function (expr, ok, value, visible, data) { trace <- getOption("track.callbacks.trace", FALSE) if (trace == 1) { cat("track.sync.callback: entered at ", date(), ", length(sys.calls())=", length(sys.calls()), "\n", sep = "") stime <- proc.time() on.exit(cat("track.sync.callback: exited at ", date(), " (", paste(round(1000 * (proc.time() - stime)[1:3]), c("u", "s", "e"), sep = "", collapse = " "), " ms)\n", sep = "")) } if (length(sys.calls()) > 1) return(TRUE) if (is.call(expr) && as.character(expr[[1]]) == "track.sync") return(TRUE) envs <- search() callback.names <- getTaskCallbackNames() envs.look <- grep("^(package:|pkgcode:|Autoloads$)", envs, invert = TRUE) any.auto.on <- FALSE for (i in envs.look) { if (env.is.tracked(i) && mget(".trackAuto", ifnotfound = list(list(on = FALSE)), envir = getTrackingEnv(as.environment(i)))[[1]]$on) { any.auto.on <- TRUE trackedEnv <- as.environment(i) trackingEnv <- getTrackingEnv(trackedEnv, stop.on.not.tracked = FALSE) res <- try(track.sync(envir = trackedEnv, trackingEnv = trackingEnv, full = NA, master = "envir", taskEnd = TRUE), silent = TRUE) if (inherits(res, "try-error")) warning("oops: track.sync() had a problem (use track.auto(FALSE, pos=) to turn off): ", res) } } if (trace == 2) { cat("\n") flush.console() } if (!isTRUE(any.auto.on)) return(FALSE) if (!is.element("track.auto.monitor", callback.names)) addTaskCallback(track.auto.monitor, name = "track.auto.monitor") return(TRUE) } --- function search by body --- Function track.sync.callback in namespace track has this body. ----------- END OF FAILURE REPORT -------------- Fatal error: length > 1 in coercion to logical * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-LENGTH1/track.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 3:37.48, 72.35 + 7.56