* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/reliaR.Rcheck’ * using R Under development (unstable) (2022-04-03 r82074) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘reliaR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘reliaR’ version ‘0.01’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘reliaR’ can be installed ... [13s/35s] OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s/56s] NOTE ks.burrX: no visible global function definition for ‘ks.test’ ks.burrX: no visible global function definition for ‘ecdf’ ks.burrX: no visible global function definition for ‘lines’ ks.chen: no visible global function definition for ‘ks.test’ ks.chen: no visible global function definition for ‘ecdf’ ks.chen: no visible global function definition for ‘lines’ ks.exp.ext: no visible global function definition for ‘ks.test’ ks.exp.ext: no visible global function definition for ‘ecdf’ ks.exp.ext: no visible global function definition for ‘lines’ ks.exp.power: no visible global function definition for ‘ks.test’ ks.exp.power: no visible global function definition for ‘ecdf’ ks.exp.power: no visible global function definition for ‘lines’ ks.expo.logistic: no visible global function definition for ‘ks.test’ ks.expo.logistic: no visible global function definition for ‘ecdf’ ks.expo.logistic: no visible global function definition for ‘lines’ ks.expo.weibull: no visible global function definition for ‘ks.test’ ks.expo.weibull: no visible global function definition for ‘ecdf’ ks.expo.weibull: no visible global function definition for ‘lines’ ks.flex.weibull: no visible global function definition for ‘ks.test’ ks.flex.weibull: no visible global function definition for ‘ecdf’ ks.flex.weibull: no visible global function definition for ‘lines’ ks.gen.exp: no visible global function definition for ‘ks.test’ ks.gen.exp: no visible global function definition for ‘ecdf’ ks.gen.exp: no visible global function definition for ‘lines’ ks.gompertz: no visible global function definition for ‘ks.test’ ks.gompertz: no visible global function definition for ‘ecdf’ ks.gompertz: no visible global function definition for ‘lines’ ks.gp.weibull: no visible global function definition for ‘ks.test’ ks.gp.weibull: no visible global function definition for ‘ecdf’ ks.gp.weibull: no visible global function definition for ‘lines’ ks.gumbel: no visible global function definition for ‘ks.test’ ks.gumbel: no visible global function definition for ‘ecdf’ ks.gumbel: no visible global function definition for ‘lines’ ks.inv.genexp: no visible global function definition for ‘ks.test’ ks.inv.genexp: no visible global function definition for ‘ecdf’ ks.inv.genexp: no visible global function definition for ‘lines’ ks.lfr: no visible global function definition for ‘ks.test’ ks.lfr: no visible global function definition for ‘ecdf’ ks.lfr: no visible global function definition for ‘lines’ ks.log.gamma: no visible global function definition for ‘ks.test’ ks.log.gamma: no visible global function definition for ‘ecdf’ ks.log.gamma: no visible global function definition for ‘lines’ ks.logis.exp: no visible global function definition for ‘ks.test’ ks.logis.exp: no visible global function definition for ‘ecdf’ ks.logis.exp: no visible global function definition for ‘lines’ ks.logis.rayleigh: no visible global function definition for ‘ks.test’ ks.logis.rayleigh: no visible global function definition for ‘ecdf’ ks.logis.rayleigh: no visible global function definition for ‘lines’ ks.loglog: no visible global function definition for ‘ks.test’ ks.loglog: no visible global function definition for ‘ecdf’ ks.loglog: no visible global function definition for ‘lines’ ks.moee: no visible global function definition for ‘ks.test’ ks.moee: no visible global function definition for ‘ecdf’ ks.moee: no visible global function definition for ‘lines’ ks.moew: no visible global function definition for ‘ks.test’ ks.moew: no visible global function definition for ‘ecdf’ ks.moew: no visible global function definition for ‘lines’ ks.weibull.ext: no visible global function definition for ‘ks.test’ ks.weibull.ext: no visible global function definition for ‘ecdf’ ks.weibull.ext: no visible global function definition for ‘lines’ pp.burrX: no visible global function definition for ‘lines’ pp.burrX: no visible global function definition for ‘cor’ pp.chen: no visible global function definition for ‘lines’ pp.chen: no visible global function definition for ‘cor’ pp.exp.ext: no visible global function definition for ‘lines’ pp.exp.ext: no visible global function definition for ‘cor’ pp.exp.power: no visible global function definition for ‘lines’ pp.exp.power: no visible global function definition for ‘cor’ pp.expo.logistic: no visible global function definition for ‘lines’ pp.expo.logistic: no visible global function definition for ‘cor’ pp.expo.weibull: no visible global function definition for ‘lines’ pp.expo.weibull: no visible global function definition for ‘cor’ pp.flex.weibull: no visible global function definition for ‘lines’ pp.flex.weibull: no visible global function definition for ‘cor’ pp.gen.exp: no visible global function definition for ‘lines’ pp.gen.exp: no visible global function definition for ‘cor’ pp.gompertz: no visible global function definition for ‘lines’ pp.gompertz: no visible global function definition for ‘cor’ pp.gp.weibull: no visible global function definition for ‘lines’ pp.gp.weibull: no visible global function definition for ‘cor’ pp.gumbel: no visible global function definition for ‘lines’ pp.gumbel: no visible global function definition for ‘cor’ pp.inv.genexp: no visible global function definition for ‘lines’ pp.inv.genexp: no visible global function definition for ‘cor’ pp.lfr: no visible global function definition for ‘lines’ pp.lfr: no visible global function definition for ‘cor’ pp.log.gamma: no visible global function definition for ‘lines’ pp.log.gamma: no visible global function definition for ‘cor’ pp.logis.exp: no visible global function definition for ‘lines’ pp.logis.exp: no visible global function definition for ‘cor’ pp.logis.rayleigh: no visible global function definition for ‘lines’ pp.logis.rayleigh: no visible global function definition for ‘cor’ pp.loglog: no visible global function definition for ‘lines’ pp.loglog: no visible global function definition for ‘cor’ pp.moee: no visible global function definition for ‘lines’ pp.moee: no visible global function definition for ‘cor’ pp.moew: no visible global function definition for ‘lines’ pp.moew: no visible global function definition for ‘cor’ pp.weibull.ext: no visible global function definition for ‘lines’ pp.weibull.ext: no visible global function definition for ‘cor’ qq.burrX: no visible global function definition for ‘lines’ qq.burrX: no visible global function definition for ‘quantile’ qq.burrX: no visible global function definition for ‘abline’ qq.chen: no visible global function definition for ‘lines’ qq.chen: no visible global function definition for ‘quantile’ qq.chen: no visible global function definition for ‘abline’ qq.exp.ext: no visible global function definition for ‘lines’ qq.exp.ext: no visible global function definition for ‘quantile’ qq.exp.ext: no visible global function definition for ‘abline’ qq.exp.power: no visible global function definition for ‘lines’ qq.exp.power: no visible global function definition for ‘quantile’ qq.exp.power: no visible global function definition for ‘abline’ qq.expo.logistic: no visible global function definition for ‘lines’ qq.expo.logistic: no visible global function definition for ‘quantile’ qq.expo.logistic: no visible global function definition for ‘abline’ qq.expo.weibull: no visible global function definition for ‘lines’ qq.expo.weibull: no visible global function definition for ‘quantile’ qq.expo.weibull: no visible global function definition for ‘abline’ qq.flex.weibull: no visible global function definition for ‘lines’ qq.flex.weibull: no visible global function definition for ‘quantile’ qq.flex.weibull: no visible global function definition for ‘abline’ qq.gen.exp: no visible global function definition for ‘lines’ qq.gen.exp: no visible global function definition for ‘quantile’ qq.gen.exp: no visible global function definition for ‘abline’ qq.gompertz: no visible global function definition for ‘lines’ qq.gompertz: no visible global function definition for ‘quantile’ qq.gompertz: no visible global function definition for ‘abline’ qq.gp.weibull: no visible global function definition for ‘lines’ qq.gp.weibull: no visible global function definition for ‘quantile’ qq.gp.weibull: no visible global function definition for ‘abline’ qq.gumbel: no visible global function definition for ‘lines’ qq.gumbel: no visible global function definition for ‘quantile’ qq.gumbel: no visible global function definition for ‘abline’ qq.inv.genexp: no visible global function definition for ‘lines’ qq.inv.genexp: no visible global function definition for ‘quantile’ qq.inv.genexp: no visible global function definition for ‘abline’ qq.lfr: no visible global function definition for ‘lines’ qq.lfr: no visible global function definition for ‘quantile’ qq.lfr: no visible global function definition for ‘abline’ qq.log.gamma: no visible global function definition for ‘lines’ qq.log.gamma: no visible global function definition for ‘quantile’ qq.log.gamma: no visible global function definition for ‘abline’ qq.logis.exp: no visible global function definition for ‘lines’ qq.logis.exp: no visible global function definition for ‘quantile’ qq.logis.exp: no visible global function definition for ‘abline’ qq.logis.rayleigh: no visible global function definition for ‘lines’ qq.logis.rayleigh: no visible global function definition for ‘quantile’ qq.logis.rayleigh: no visible global function definition for ‘abline’ qq.loglog: no visible global function definition for ‘lines’ qq.loglog: no visible global function definition for ‘quantile’ qq.loglog: no visible global function definition for ‘abline’ qq.moee: no visible global function definition for ‘lines’ qq.moee: no visible global function definition for ‘quantile’ qq.moee: no visible global function definition for ‘abline’ qq.moew: no visible global function definition for ‘lines’ qq.moew: no visible global function definition for ‘quantile’ qq.moew: no visible global function definition for ‘abline’ qq.weibull.ext: no visible global function definition for ‘lines’ qq.weibull.ext: no visible global function definition for ‘quantile’ qq.weibull.ext: no visible global function definition for ‘abline’ rburrX: no visible global function definition for ‘runif’ rchen: no visible global function definition for ‘runif’ rexp.ext: no visible global function definition for ‘runif’ rexp.power: no visible global function definition for ‘runif’ rexpo.logistic: no visible global function definition for ‘runif’ rexpo.weibull: no visible global function definition for ‘runif’ rflex.weibull: no visible global function definition for ‘runif’ rgen.exp: no visible global function definition for ‘runif’ rgompertz: no visible global function definition for ‘runif’ rgp.weibull: no visible global function definition for ‘runif’ rgumbel: no visible global function definition for ‘runif’ rinv.genexp: no visible global function definition for ‘runif’ rlfr: no visible global function definition for ‘runif’ rlog.gamma: no visible global function definition for ‘runif’ rlogis.exp: no visible global function definition for ‘runif’ rlogis.rayleigh: no visible global function definition for ‘runif’ rloglog: no visible global function definition for ‘runif’ rmoee: no visible global function definition for ‘runif’ rmoew: no visible global function definition for ‘runif’ rweibull.ext: no visible global function definition for ‘runif’ Undefined global functions or variables: abline cor ecdf ks.test lines quantile runif Consider adding importFrom("graphics", "abline", "lines") importFrom("stats", "cor", "ecdf", "ks.test", "quantile", "runif") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... ERROR Running examples in ‘reliaR-Ex.R’ failed The error most likely occurred in: > ### Name: BurrX > ### Title: The BurrX (Generalized Rayleigh) distribution > ### Aliases: BurrX dburrX pburrX qburrX rburrX > ### Keywords: distribution > > ### ** Examples > > ## Load data sets > data(bearings) > ## Maximum Likelihood(ML) Estimates of alpha & lambda for the data(bearings) > ## Estimates of alpha & lambda using 'maxLik' package > ## alpha.est = 1.1989515, lambda.est = 0.0130847 > > dburrX(bearings, 1.1989515, 0.0130847, log = FALSE) ----------- FAILURE REPORT -------------- --- failure: length > 1 in coercion to logical --- --- srcref --- : --- package (from environment) --- reliaR --- call from context --- dburrX(bearings, 1.1989515, 0.0130847, log = FALSE) --- call from argument --- (min(alpha) <= 0) || (min(lambda) <= 0) || (x <= 0) --- R stacktrace --- where 1: dburrX(bearings, 1.1989515, 0.0130847, log = FALSE) --- value of length: 23 type: logical --- [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE [13] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE --- function from context --- function (x, alpha, lambda, log = FALSE) { if ((!is.numeric(alpha)) || (!is.numeric(lambda)) || (!is.numeric(x))) stop("non-numeric argument to mathematical function") if ((min(alpha) <= 0) || (min(lambda) <= 0) || (x <= 0)) stop("Invalid arguments") u <- exp(2 * (log(lambda) + log(x))) pdf <- exp(log(2) + log(alpha) + 2 * log(lambda) + log(x) - u + (alpha - 1) * log(1 - exp(-u))) if (log) pdf <- log(pdf) return(pdf) } --- function search by body --- Function dburrX in namespace reliaR has this body. ----------- END OF FAILURE REPORT -------------- Fatal error: length > 1 in coercion to logical * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs See ‘/data/gannet/ripley/R/packages/tests-LENGTH1/reliaR.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 2:48.10, 76.89 + 6.80