* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/pinbasic.Rcheck’
* using R Under development (unstable) (2022-04-26 r82260)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘pinbasic/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pinbasic’ version ‘1.2.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pinbasic’ can be installed ... [52s/93s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/54s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [10s/19s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘pinbasicVignette.Rmd’ using rmarkdown
pin_ll(param = NULL, numbuys = NULL, numsells = NULL, factorization = "Lin_Ke")
initial_vals(numbuys = NULL, numsells = NULL, method = "HAC", length = 5,
    num_clust = 5, details = FALSE)
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
pinbasic
 --- call from context --- 
ggplot.posterior(post_third)
 --- call from argument --- 
!is.null(rownames(x)) && is.na(check_rows)
 --- R stacktrace ---
where 1: ggplot.posterior(post_third)
where 2: ggplot(post_third)
where 3: eval(expr, envir, enclos)
where 4: eval(expr, envir, enclos)
where 5: eval_with_user_handlers(expr, envir, enclos, user_handlers)
where 6: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
where 7: withCallingHandlers(withVisible(eval_with_user_handlers(expr, 
    envir, enclos, user_handlers)), warning = wHandler, error = eHandler, 
    message = mHandler)
where 8: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, 
    envir, enclos, user_handlers)), warning = wHandler, error = eHandler, 
    message = mHandler))
where 9: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, 
    envir, enclos, user_handlers)), warning = wHandler, error = eHandler, 
    message = mHandler)))
where 10: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, 
    debug = debug, last = i == length(out), use_try = stop_on_error != 
        2L, keep_warning = keep_warning, keep_message = keep_message, 
    output_handler = output_handler, include_timing = include_timing)
where 11: evaluate::evaluate(...)
where 12: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), 
    keep_message = !isFALSE(options$message), stop_on_error = if (is.numeric(options$error)) options$error else {
        if (options$error && options$include) 
            0L
        else 2L
    }, output_handler = knit_handlers(options$render, options))
where 13: in_dir(input_dir(), expr)
where 14: in_input_dir(evaluate(code, envir = env, new_device = FALSE, 
    keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), 
    stop_on_error = if (is.numeric(options$error)) options$error else {
        if (options$error && options$include) 
            0L
        else 2L
    }, output_handler = knit_handlers(options$render, options)))
where 15: eng_r(options)
where 16: block_exec(params)
where 17: call_block(x)
where 18: process_group.block(group)
where 19: process_group(group)
where 20: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 
    error = function(e) {
        setwd(wd)
        cat(res, sep = "\n", file = output %n% "")
        message("Quitting from lines ", paste(current_lines(i), 
            collapse = "-"), " (", knit_concord$get("infile"), 
            ") ")
    })
where 21: process_file(text, output)
where 22: knit(..., tangle = opts_knit$get("tangle"), envir = envir)
where 23: FUN(X[[i]], ...)
where 24: lapply(sc_split(params$child), knit_child, options = block$params)
where 25: call_block(x)
where 26: process_group.block(group)
where 27: process_group(group)
where 28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 
    error = function(e) {
        setwd(wd)
        cat(res, sep = "\n", file = output %n% "")
        message("Quitting from lines ", paste(current_lines(i), 
            collapse = "-"), " (", knit_concord$get("infile"), 
            ") ")
    })
where 29: process_file(text, output)
where 30: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
where 31: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), 
    output_dir = getwd(), ...)
where 32: vweave_rmarkdown(...)
where 33: engine$weave(file, quiet = quiet, encoding = enc)
where 34: doTryCatch(return(expr), name, parentenv, handler)
where 35: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 36: tryCatchList(expr, classes, parentenv, handlers)
where 37: tryCatch({
    engine$weave(file, quiet = quiet, encoding = enc)
    setwd(startdir)
    output <- find_vignette_product(name, by = "weave", engine = engine)
    if (!have.makefile && vignette_is_tex(output)) {
        texi2pdf(file = output, clean = FALSE, quiet = quiet)
        output <- find_vignette_product(name, by = "texi2pdf", 
            engine = engine)
    }
    outputs <- c(outputs, output)
}, error = function(e) {
    thisOK <<- FALSE
    fails <<- c(fails, file)
    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", 
        file, conditionMessage(e)))
})
where 38: tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-LENGTH1/pinbasic.Rcheck/vign_test/pinbasic")

 --- value of length: 66 type: logical ---
 [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[13] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[25] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[37] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[49] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[61] FALSE FALSE FALSE FALSE FALSE FALSE
 --- function from context --- 
function (x) 
{
    if (is.null(rownames(x))) {
        df <- data.frame(bs_date = 1:nrow(x), no = x[, "no"], 
            good = x[, "good"], bad = x[, "bad"])
    }
    else {
        check_rows <- check_bs_dates(rownames(x))
        if (!all(is.na(check_rows))) {
            df <- data.frame(bs_date = as.Date(rownames(x)), 
                no = x[, "no"], good = x[, "good"], bad = x[, 
                  "bad"])
        }
        if (!is.null(rownames(x)) && is.na(check_rows)) {
            df <- data.frame(bs_date = rownames(x), no = x[, 
                "no"], good = x[, "good"], bad = x[, "bad"])
        }
    }
    df_melt <- melt(df, id = "bs_date")
    dp_plot <- ggplot(df_melt, aes(x = bs_date, y = value, fill = variable)) + 
        geom_bar(stat = "identity", position = "fill", width = 0.5) + 
        ylab("Posterior Probabilities \n of Trading Days' Conditions") + 
        scale_fill_discrete(breaks = c("no", "good", "bad"), 
            labels = c("no-news", "good-news", "bad-news"), guide = guide_legend(nrow = 1, 
                keywidth = 0.5, keyheight = 0.5, title = NULL, 
                label.position = "right")) + theme(axis.title.x = element_blank(), 
        legend.position = "bottom")
    dp_plot
}
<bytecode: 0x25fd2d8>
<environment: namespace:pinbasic>
 --- function search by body ---
Function ggplot.posterior in namespace pinbasic has this body.
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR
See
  ‘/data/gannet/ripley/R/packages/tests-LENGTH1/pinbasic.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 5:40.36, 129.73 + 13.43