* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/nlirms.Rcheck’ * using R Under development (unstable) (2022-04-26 r82260) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘nlirms/DESCRIPTION’ ... OK * this is package ‘nlirms’ version ‘3.4.4’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nlirms’ can be installed ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/16s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory * checking examples ... ERROR Running examples in ‘nlirms-Ex.R’ failed The error most likely occurred in: > ### Name: enc.PGA > ### Title: Expected number of claims based on the Poisson-Gamma (Negetive > ### Binomial) model > ### Aliases: PGA dPGA enc.PGA > > ### ** Examples > > dPGA(k=1, mu=.1, sigma=2) [1] 0.08638376 > enc.PGA(time = 2, claim = 1, mu = .1, sigma = 2) [1] 0.1363636 > time=1:5 > enc.PGA(time = time, claim = 1, mu = .1, sigma = 2) ----------- FAILURE REPORT -------------- --- failure: length > 1 in coercion to logical --- --- srcref --- : --- package (from environment) --- nlirms --- call from context --- enc.PGA(time = time, claim = 1, mu = 0.1, sigma = 2) --- call from argument --- time == 0 && claim > 0 --- R stacktrace --- where 1: enc.PGA(time = time, claim = 1, mu = 0.1, sigma = 2) --- value of length: 5 type: logical --- [1] FALSE FALSE FALSE FALSE FALSE --- function from context --- function (time = 2, claim = 1, mu = 0.1, sigma = 2) { if (any(time < 0)) stop(paste("time must be >=0", "\n", "")) if (any(claim < 0)) stop(paste("claim must be >=0", "\n", "")) if (any(mu <= 0)) stop(paste("mu must be greater than 0 ", "\n", "")) if (any(sigma <= 0)) stop(paste("sigma must be greater than 0 ", "\n", "")) if (any(time == 0 && claim > 0)) stop(paste("claim must be 0 in time=0 ", "\n", "")) enc <- (claim + sigma)/(time + (sigma/mu)) enc } --- function search by body --- Function enc.PGA in namespace nlirms has this body. ----------- END OF FAILURE REPORT -------------- Fatal error: length > 1 in coercion to logical * checking PDF version of manual ... OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE See ‘/data/gannet/ripley/R/packages/tests-LENGTH1/nlirms.Rcheck/00check.log’ for details. Command exited with non-zero status 1 Time 1:34.82, 30.30 + 5.52