* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/glrt.Rcheck’
* using R Under development (unstable) (2022-04-26 r82260)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘glrt/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘glrt’ version ‘2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘glrt’ can be installed ... [12s/35s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/56s] NOTE
ScoreTest: no visible global function definition for ‘pchisq’
Var1: no visible global function definition for ‘runif’
gLRT1: no visible global function definition for ‘pchisq’
gLRT2: no visible global function definition for ‘pchisq’
gLRT3: no visible global function definition for ‘pchisq’
gLRT4: no visible global function definition for ‘pf’
Undefined global functions or variables:
  pchisq pf runif
Consider adding
  importFrom("stats", "pchisq", "pf", "runif")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [4s/11s] ERROR
Running examples in ‘glrt-Ex.R’ failed
The error most likely occurred in:

> ### Name: CensorType
> ### Title: Determine types of censoring based on censoring intervals
> ### Aliases: CensorType
> 
> ### ** Examples
> 
> A = matrix(c(1, 3, 0, 4, 3, 100, 3, 3), ncol=2, byrow=TRUE)
> CensorType(A, 100)
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
glrt
 --- call from context --- 
CensorType(A, 100)
 --- call from argument --- 
A[, 1] == 0 && A[, 2] == inf
 --- R stacktrace ---
where 1: CensorType(A, 100)

 --- value of length: 4 type: logical ---
[1] FALSE  TRUE FALSE FALSE
 --- function from context --- 
function (A, inf = Inf) 
{
    cens = as.integer(rep(2, nrow(A)))
    if (any(A[, 1] == 0 && A[, 2] == inf)) {
        warning("Observation: (0, inf)!")
        return(NULL)
    }
    else {
        cens[which(A[, 1] == 0)] = 1
        cens[which(A[, 2] == inf)] = 3
        cens[which(A[, 1] == A[, 2])] = 4
    }
    cens
}
<bytecode: 0xaac6a40>
<environment: namespace:glrt>
 --- function search by body ---
Function CensorType in namespace glrt has this body.
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/data/gannet/ripley/R/packages/tests-LENGTH1/glrt.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 4:40.72, 94.59 + 9.99