* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/frambgrowth.Rcheck’
* using R Under development (unstable) (2022-04-26 r82260)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘frambgrowth/DESCRIPTION’ ... OK
* this is package ‘frambgrowth’ version ‘0.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘frambgrowth’ can be installed ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/14s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking LazyData ... NOTE
  'LazyData' is specified without a 'data' directory
* checking examples ... ERROR
Running examples in ‘frambgrowth-Ex.R’ failed
The error most likely occurred in:

> ### Name: Framboids_growth
> ### Title: Generate size distribution of framboidal pyrite based on
> ###   different growth mechanisms
> ### Aliases: Framboids_growth
> 
> ### ** Examples
> 
> ## Size dependent and surface-controlled growth of 1000 framboids adding nanocrystals
> ## until the mean of the diameters of framboids was 15 micrometers.
> library(frambgrowth)
> Framboids<-Framboids_growth(100,Initialization=TRUE, Simulation=1,
+ Iterations=1000, MaxMeanDiameter=15)
> ## Size dependent and surface-controlled growth of 1000 framboids adding nanocrystals
> ## until the mean of the diameters of framboids was 10 micrometers,
> ## followed by size dependent and supply-controlled growth until the mean was 15 micrometers.
> Framboids<-Framboids_growth(100,Initialization=TRUE, Simulation=1,
+ Iterations=1000, MaxMeanDiameter=10)
> Framboids<-Framboids_growth(100,Initialization=FALSE, Simulation=5, framboids=Framboids,
+ Iterations=1000, MaxMeanDiameter=15)
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
frambgrowth
 --- call from context --- 
Framboids_growth(100, Initialization = FALSE, Simulation = 5, 
    framboids = Framboids, Iterations = 1000, MaxMeanDiameter = 15)
 --- call from argument --- 
(!(Initialization)) && (is.na(framboids))
 --- R stacktrace ---
where 1: Framboids_growth(100, Initialization = FALSE, Simulation = 5, 
    framboids = Framboids, Iterations = 1000, MaxMeanDiameter = 15)

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           c diameter initial_diameter nanocrystals_diameter
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       nanocrystals_factor volume nanocrystals
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 --- function from context --- 
function (Number_Framboids = 1000, Initialization = TRUE, framboids, 
    Simulation = 1, Initial_Diameter = 0, Nanocrystals_Diameter = 0.1, 
    Packing_Factor = 0.74078, Random_Limit = 1, Iterations = 3, 
    MaxMeanDiameter = 20) 
{
    if (Number_Framboids < 1) {
        print("Number of framboids lower than 0")
        return()
    }
    if ((!(Initialization)) && (is.na(framboids))) {
        print("Please specify the variable framboids")
        return()
    }
    N <- Number_Framboids
    mu <- Random_Limit
    if (Initialization) {
        D0 <- Initial_Diameter
        d <- Nanocrystals_Diameter
        F <- Packing_Factor
        framboids <- data.frame(c = 1:N, diameter = D0, initial_diameter = D0, 
            nanocrystals_diameter = d, nanocrystals_factor = F, 
            volume = 0, nanocrystals = 0)
        for (j in 1:N) {
            if (D0 > 0) {
                framboids$initial_diameter[j] <- D0 + runif(1) * 
                  0.01
                framboids$diameter[j] <- framboids$initial_diameter[j]
            }
            framboids$nanocrystals_diameter[j] <- (d - 0.01) + 
                runif(1) * 0.02
            framboids$nanocrystals_factor[j] <- (F - 0.01) + 
                runif(1) * 0.02
        }
    }
    runif(1)
    i <- 0
    AverageDiameter <- mean(framboids$diameter)
    while ((i < Iterations) && (AverageDiameter < MaxMeanDiameter)) {
        EpsilonC <- runif(1) * mu
        for (j in 1:N) {
            EpsilonF <- runif(1) * mu
            F <- framboids$nanocrystals_factor[j]
            d <- framboids$nanocrystals_diameter[j]
            D0 <- framboids$initial_diameter[j]
            W <- ((4 * pi * F)/3) * ((D0/2)^3)
            P <- round(F * ((D0/d)^3))
            if (framboids$nanocrystals[j] == 0) {
                framboids$nanocrystals[j] <- round(1 + EpsilonF)
            }
            else {
                if (Simulation == 1) {
                  framboids$nanocrystals[j] <- framboids$nanocrystals[j] * 
                    (1 + EpsilonF)
                }
                if (Simulation == 2) {
                  framboids$nanocrystals[j] <- framboids$nanocrystals[j] + 
                    EpsilonF
                }
                if (Simulation == 3) {
                  framboids$diameter[j] <- framboids$diameter[j] * 
                    (1 + EpsilonF)
                  framboids$nanocrystals[j] <- round(F * ((framboids$diameter[j]/d)^3) - 
                    P)
                }
                if (Simulation == 4) {
                  framboids$diameter[j] <- framboids$diameter[j] + 
                    EpsilonF
                  framboids$nanocrystals[j] <- round(F * ((framboids$diameter[j]/d)^3) - 
                    P)
                }
                if (Simulation == 5) {
                  framboids$nanocrystals[j] <- framboids$nanocrystals[j] * 
                    (1 + EpsilonF * EpsilonC)
                }
                if (Simulation == 6) {
                  framboids$diameter[j] <- framboids$diameter[j] * 
                    (1 + EpsilonF * EpsilonC)
                  framboids$nanocrystals[j] <- round(F * ((framboids$diameter[j]/d)^3) - 
                    P)
                }
                if (Simulation == 7) {
                  framboids$nanocrystals[j] <- framboids$nanocrystals[j] + 
                    EpsilonF * EpsilonC
                }
                if (Simulation == 8) {
                  framboids$diameter[j] <- framboids$diameter[j] + 
                    EpsilonF * EpsilonC
                  framboids$nanocrystals[j] <- round(F * ((framboids$diameter[j]/d)^3) - 
                    P)
                }
            }
            framboids$diameter[j] <- d * (((framboids$nanocrystals[j] + 
                P)/F)^(1/3))
            framboids$volume[j] <- ((F * 4 * pi)/3) * ((framboids$diameter[j]/2)^3) - 
                W
        }
        i <- i + 1
        AverageDiameter <- mean(framboids$diameter)
    }
    return(framboids)
}
<bytecode: 0x146cbc0>
<environment: namespace:frambgrowth>
 --- function search by body ---
Function Framboids_growth in namespace frambgrowth has this body.
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-LENGTH1/frambgrowth.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 1:25.96, 25.99 + 5.04