* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/SDDE.Rcheck’
* using R Under development (unstable) (2022-04-26 r82260)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘SDDE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SDDE’ version ‘1.0.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SDDE’ can be installed ... [8s/22s] OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/31s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File ‘SDDE/libs/SDDE.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... ERROR
Running examples in ‘SDDE-Ex.R’ failed
The error most likely occurred in:

> ### Name: complete_network
> ### Title: compare two given networks (original and augmented, presented as
> ###   undirected graphs) using a path analysis
> ### Aliases: complete_network
> 
> ### ** Examples
> 
> ## Searching the sample data (containing 11 original nodes and 3 augmented nodes)
> data(Sample_1)
> result <- complete_network(g1, g2)
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
SDDE
 --- call from context --- 
eval(.doSnowGlobals$expr, envir = .doSnowGlobals$exportenv)
 --- call from argument --- 
(maxdistance == 0 || total_access_k == length(list_of_knames)) && 
    tp1 < maxtime
 --- R stacktrace ---
where 1: eval(.doSnowGlobals$expr, envir = .doSnowGlobals$exportenv)
where 2: eval(.doSnowGlobals$expr, envir = .doSnowGlobals$exportenv)
where 3: doTryCatch(return(expr), name, parentenv, handler)
where 4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 5: tryCatchList(expr, classes, parentenv, handlers)
where 6: tryCatch(eval(.doSnowGlobals$expr, envir = .doSnowGlobals$exportenv), 
    error = function(e) e)
where 7: (function (args) 
{
    lapply(names(args), function(n) assign(n, args[[n]], pos = .doSnowGlobals$exportenv))
    tryCatch(eval(.doSnowGlobals$expr, envir = .doSnowGlobals$exportenv), 
        error = function(e) e)
})(base::quote(list(i = 5L, j = 4L)))
where 8: do.call(msg$data$fun, msg$data$args, quote = TRUE)
where 9: doTryCatch(return(expr), name, parentenv, handler)
where 10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 11: tryCatchList(expr, classes, parentenv, handlers)
where 12: tryCatch(do.call(msg$data$fun, msg$data$args, quote = TRUE), 
    error = handler)
where 13: doTryCatch(return(expr), name, parentenv, handler)
where 14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 15: tryCatchList(expr, classes, parentenv, handlers)
where 16: tryCatch({
    msg <- recvData(master)
    if (msg$type == "DONE") {
        closeNode(master)
        FALSE
    }
    else if (msg$type == "EXEC") {
        success <- TRUE
        handler <- function(e) {
            success <<- FALSE
            structure(conditionMessage(e), class = c("snow-try-error", 
                "try-error"))
        }
        t1 <- proc.time()
        value <- tryCatch(do.call(msg$data$fun, msg$data$args, 
            quote = TRUE), error = handler)
        t2 <- proc.time()
        value <- list(type = "VALUE", value = value, success = success, 
            time = t2 - t1, tag = msg$data$tag)
        msg <- NULL
        sendData(master, value)
        value <- NULL
        TRUE
    }
    else {
        TRUE
    }
}, interrupt = function(e) TRUE)
where 17: workCommand(master)
where 18: workLoop(makeSOCKmaster(master, port, setup_timeout, timeout, 
    useXDR, setup_strategy))
where 19: tryCatch(parallel:::.workRSOCK, error = function(e) parallel:::.slaveRSOCK)()

 --- value of length: 5 type: logical ---
 user.self   sys.self    elapsed user.child  sys.child 
      TRUE       TRUE       TRUE       TRUE       TRUE 
 --- function from context --- 
 --- function search by body ---
 ----------- END OF FAILURE REPORT -------------- 
Error in unserialize(socklist[[n]]) : error reading from connection
Calls: complete_network ... recvOneData -> recvOneData.SOCKcluster -> unserialize
Execution halted
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-LENGTH1/SDDE.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:41.45, 55.08 + 8.06