* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/HARtools.Rcheck’
* using R Under development (unstable) (2022-04-26 r82260)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘HARtools/DESCRIPTION’ ... OK
* this is package ‘HARtools’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HARtools’ can be installed ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/19s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking LazyData ... NOTE
  'LazyData' is specified without a 'data' directory
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘HARtools-Ex.R’ failed
The error most likely occurred in:

> ### Name: readHAR
> ### Title: Read HAR objects
> ### Aliases: readHAR
> 
> ### ** Examples
> 
> har <- readHAR(system.file(package = "HARtools",
+                         "exdata", "google.com.har"))
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
HARtools
 --- call from context --- 
contains_required(harLog, c("version", "creator", "entries"))
 --- call from argument --- 
is.list(x) && (required %in% names(x))
 --- R stacktrace ---
where 1: contains_required(harLog, c("version", "creator", "entries"))
where 2: eval(assertion, env)
where 3: eval(assertion, env)
where 4: doTryCatch(return(expr), name, parentenv, handler)
where 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 6: tryCatchList(expr, classes, parentenv, handlers)
where 7: tryCatch({
    eval(assertion, env)
}, assertError = function(e) {
    structure(FALSE, msg = e$message)
})
where 8: see_if(..., env = env, msg = msg)
where 9: assert_that(contains_required(harLog, c("version", "creator", 
    "entries")))
where 10: processHAR(har)
where 11: readHARList(harList)
where 12: readHARfile(har, ...)
where 13: readHAR(system.file(package = "HARtools", "exdata", "google.com.har"))

 --- value of length: 3 type: logical ---
[1] TRUE TRUE TRUE
 --- function from context --- 
function (x, required) 
{
    is.list(x) && (required %in% names(x))
}
<bytecode: 0x34a2098>
<environment: namespace:HARtools>
attr(,"fail")
function (call, env) 
{
    required <- eval(call$required, env)
    paste0(deparse(call$x), " does not have one of ", paste(required, 
        collapse = ","), " as required by specification.")
}
<environment: namespace:HARtools>
 --- function search by body ---
Function contains_required in namespace HARtools has this body.
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘Basic_use.Rmd’ using rmarkdown
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
HARtools
 --- call from context --- 
contains_required(harLog, c("version", "creator", "entries"))
 --- call from argument --- 
is.list(x) && (required %in% names(x))
 --- R stacktrace ---
where 1: contains_required(harLog, c("version", "creator", "entries"))
where 2: eval(assertion, env)
where 3: eval(assertion, env)
where 4: doTryCatch(return(expr), name, parentenv, handler)
where 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 6: tryCatchList(expr, classes, parentenv, handlers)
where 7: tryCatch({
    eval(assertion, env)
}, assertError = function(e) {
    structure(FALSE, msg = e$message)
})
where 8: see_if(..., env = env, msg = msg)
where 9: assert_that(contains_required(harLog, c("version", "creator", 
    "entries")))
where 10: processHAR(har)
where 11: readHARList(harList)
where 12: readHARfile(har, ...)
where 13: readHAR(system.file(package = "HARtools", "exdata", "google.com.har"))
where 14: eval(expr, envir, enclos)
where 15: eval(expr, envir, enclos)
where 16: eval_with_user_handlers(expr, envir, enclos, user_handlers)
where 17: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
where 18: withCallingHandlers(withVisible(eval_with_user_handlers(expr, 
    envir, enclos, user_handlers)), warning = wHandler, error = eHandler, 
    message = mHandler)
where 19: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, 
    envir, enclos, user_handlers)), warning = wHandler, error = eHandler, 
    message = mHandler))
where 20: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, 
    envir, enclos, user_handlers)), warning = wHandler, error = eHandler, 
    message = mHandler)))
where 21: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, 
    debug = debug, last = i == length(out), use_try = stop_on_error != 
        2L, keep_warning = keep_warning, keep_message = keep_message, 
    output_handler = output_handler, include_timing = include_timing)
where 22: evaluate::evaluate(...)
where 23: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), 
    keep_message = !isFALSE(options$message), stop_on_error = if (is.numeric(options$error)) options$error else {
        if (options$error && options$include) 
            0L
        else 2L
    }, output_handler = knit_handlers(options$render, options))
where 24: in_dir(input_dir(), expr)
where 25: in_input_dir(evaluate(code, envir = env, new_device = FALSE, 
    keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), 
    stop_on_error = if (is.numeric(options$error)) options$error else {
        if (options$error && options$include) 
            0L
        else 2L
    }, output_handler = knit_handlers(options$render, options)))
where 26: eng_r(options)
where 27: block_exec(params)
where 28: call_block(x)
where 29: process_group.block(group)
where 30: process_group(group)
where 31: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), 
    error = function(e) {
        setwd(wd)
        cat(res, sep = "\n", file = output %n% "")
        message("Quitting from lines ", paste(current_lines(i), 
            collapse = "-"), " (", knit_concord$get("infile"), 
            ") ")
    })
where 32: process_file(text, output)
where 33: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
where 34: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), 
    output_dir = getwd(), ...)
where 35: vweave_rmarkdown(...)
where 36: engine$weave(file, quiet = quiet, encoding = enc)
where 37: doTryCatch(return(expr), name, parentenv, handler)
where 38: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 39: tryCatchList(expr, classes, parentenv, handlers)
where 40: tryCatch({
    engine$weave(file, quiet = quiet, encoding = enc)
    setwd(startdir)
    output <- find_vignette_product(name, by = "weave", engine = engine)
    if (!have.makefile && vignette_is_tex(output)) {
        texi2pdf(file = output, clean = FALSE, quiet = quiet)
        output <- find_vignette_product(name, by = "texi2pdf", 
            engine = engine)
    }
    outputs <- c(outputs, output)
}, error = function(e) {
    thisOK <<- FALSE
    fails <<- c(fails, file)
    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", 
        file, conditionMessage(e)))
})
where 41: tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-LENGTH1/HARtools.Rcheck/vign_test/HARtools")

 --- value of length: 3 type: logical ---
[1] TRUE TRUE TRUE
 --- function from context --- 
function (x, required) 
{
    is.list(x) && (required %in% names(x))
}
<bytecode: 0x3743428>
<environment: namespace:HARtools>
attr(,"fail")
function (call, env) 
{
    required <- eval(call$required, env)
    paste0(deparse(call$x), " does not have one of ", paste(required, 
        collapse = ","), " as required by specification.")
}
<environment: namespace:HARtools>
 --- function search by body ---
Function contains_required in namespace HARtools has this body.
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/data/gannet/ripley/R/packages/tests-LENGTH1/HARtools.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 2:04.34, 40.53 + 7.28