* using log directory ‘/data/gannet/ripley/R/packages/tests-LENGTH1/BMS.Rcheck’
* using R Under development (unstable) (2022-04-25 r82252)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘BMS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BMS’ version ‘0.3.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BMS’ can be installed ... [13s/67s] OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/179s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/22s] ERROR
Running examples in ‘BMS-Ex.R’ failed
The error most likely occurred in:

> ### Name: BMS-package
> ### Title: Bayesian Model Sampling 0.3.4
> ### Aliases: BMS-package BMS
> ### Keywords: package
> 
> ### ** Examples
> 
> data(datafls)
> mfls =bms(X.data=datafls,burn=1000,iter=9000,nmodel=100)
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
BMS
 --- call from context --- 
postad.reg.names(X.data)
 --- call from argument --- 
is.null(colnames(X.data)[-1]) || colnames(X.data)[-1] == ""
 --- R stacktrace ---
where 1: postad.reg.names(X.data)
where 2: .post.calc(gprior.info, add.otherstats, k.vec, null.count, X.data, 
    topmods, b1mo, b2mo, iter, burn, inccount, models.visited, 
    K, N, msize, timed, cumsumweights, mcmc, possign)
where 3: bms(X.data = datafls, burn = 1000, iter = 9000, nmodel = 100)

 --- value of length: 41 type: logical ---
 [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[13] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[25] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
[37] FALSE FALSE FALSE FALSE FALSE
 --- function from context --- 
function (X.data) 
{
    if (is.null(colnames(X.data)[-1]) || colnames(X.data)[-1] == 
        "") {
        reg.names <- paste("beta", 1:K)
    }
    else {
        reg.names = colnames(X.data)[-1]
    }
    return(reg.names)
}
<bytecode: 0x3b9d090>
<environment: 0x3baa7f0>
 --- function search by body ---
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [2s/11s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘bms.Rnw’ using Sweave
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
BMS
 --- call from context --- 
postad.reg.names(X.data)
 --- call from argument --- 
is.null(colnames(X.data)[-1]) || colnames(X.data)[-1] == ""
 --- R stacktrace ---
where 1: postad.reg.names(X.data)
where 2: .post.calc(gprior.info, add.otherstats, k.vec, null.count, X.data, 
    topmods, b1mo, b2mo, iter, burn, inccount, models.visited, 
    K, N, msize, timed, cumsumweights, mcmc, possign)
where 3: bms(attitude, mprior = "uniform", g = "UIP", user.int = F)
where 4: eval(expr, .GlobalEnv)
where 5: eval(expr, .GlobalEnv)
where 6: withVisible(eval(expr, .GlobalEnv))
where 7: doTryCatch(return(expr), name, parentenv, handler)
where 8: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 9: tryCatchList(expr, classes, parentenv, handlers)
where 10: tryCatch(expr, error = function(e) {
    call <- conditionCall(e)
    if (!is.null(call)) {
        if (identical(call[[1L]], quote(doTryCatch))) 
            call <- sys.call(-4L)
        dcall <- deparse(call, nlines = 1L)
        prefix <- paste("Error in", dcall, ": ")
        LONG <- 75L
        sm <- strsplit(conditionMessage(e), "\n")[[1L]]
        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
        if (is.na(w)) 
            w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], 
                type = "b")
        if (w > LONG) 
            prefix <- paste0(prefix, "\n  ")
    }
    else prefix <- "Error : "
    msg <- paste0(prefix, conditionMessage(e), "\n")
    .Internal(seterrmessage(msg[1L]))
    if (!silent && isTRUE(getOption("show.error.messages"))) {
        cat(msg, file = outFile)
        .Internal(printDeferredWarnings())
    }
    invisible(structure(msg, class = "try-error", condition = e))
})
where 11: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
where 12: evalFunc(ce, options)
where 13: tryCatchList(expr, classes, parentenv, handlers)
where 14: tryCatch(evalFunc(ce, options), finally = {
    cat("\n")
    sink()
})
where 15: driver$runcode(drobj, chunk, chunkopts)
where 16: utils::Sweave(...)
where 17: engine$weave(file, quiet = quiet, encoding = enc)
where 18: doTryCatch(return(expr), name, parentenv, handler)
where 19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 20: tryCatchList(expr, classes, parentenv, handlers)
where 21: tryCatch({
    engine$weave(file, quiet = quiet, encoding = enc)
    setwd(startdir)
    output <- find_vignette_product(name, by = "weave", engine = engine)
    if (!have.makefile && vignette_is_tex(output)) {
        texi2pdf(file = output, clean = FALSE, quiet = quiet)
        output <- find_vignette_product(name, by = "texi2pdf", 
            engine = engine)
    }
    outputs <- c(outputs, output)
}, error = function(e) {
    thisOK <<- FALSE
    fails <<- c(fails, file)
    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", 
        file, conditionMessage(e)))
})
where 22: tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-LENGTH1/BMS.Rcheck/vign_test/BMS")

 --- value of length: 6 type: logical ---
[1] FALSE FALSE FALSE FALSE FALSE FALSE
 --- function from context --- 
function (X.data) 
{
    if (is.null(colnames(X.data)[-1]) || colnames(X.data)[-1] == 
        "") {
        reg.names <- paste("beta", 1:K)
    }
    else {
        reg.names = colnames(X.data)[-1]
    }
    return(reg.names)
}
<bytecode: 0x388c478>
<environment: 0x388de58>
 --- function search by body ---
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical

* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 2 ERRORs
See
  ‘/data/gannet/ripley/R/packages/tests-LENGTH1/BMS.Rcheck/00check.log’
for details.

Command exited with non-zero status 1
Time 8:40.53, 86.36 + 8.52