* using log directory ‘/Users/ripley/R/packages/tests-Accelerate/viralmodels.Rcheck’ * using R Under development (unstable) (2023-09-17 r85158) * using platform: aarch64-apple-darwin22.6.0 * R was compiled by Apple clang version 15.0.0 (clang-1500.0.40.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.5.2 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘viralmodels/DESCRIPTION’ ... OK * this is package ‘viralmodels’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘viralmodels’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(viralmodels) > > test_check("viralmodels") [ FAIL 1 | WARN 0 | SKIP 1 | PASS 1 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-viralvis.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-viraltab.R:48:3'): viraltab() works ────────────────────────── viraltab(x, semilla, target, pliegues, repeticiones, rejilla) (`actual`) not equal to `y` (`expected`). actual vs expected wflow_id preprocessor actual[2, ] normalized_neural_network recipe actual[3, ] simple_neural_network workflow_variables actual[4, ] simple_neural_network workflow_variables - actual[5, ] normalized_MARS recipe + expected[5, ] simple_MARS workflow_variables - actual[6, ] normalized_MARS recipe + expected[6, ] simple_MARS workflow_variables - actual[7, ] simple_MARS workflow_variables + expected[7, ] normalized_MARS recipe - actual[8, ] simple_MARS workflow_variables + expected[8, ] normalized_MARS recipe actual$wflow_id | expected$wflow_id [2] "normalized_neural_network" | "normalized_neural_network" [2] [3] "simple_neural_network" | "simple_neural_network" [3] [4] "simple_neural_network" | "simple_neural_network" [4] [5] "normalized_MARS" - "simple_MARS" [5] [6] "normalized_MARS" - "simple_MARS" [6] [7] "simple_MARS" - "normalized_MARS" [7] [8] "simple_MARS" - "normalized_MARS" [8] actual$preprocessor | expected$preprocessor [2] "recipe" | "recipe" [2] [3] "workflow_variables" | "workflow_variables" [3] [4] "workflow_variables" | "workflow_variables" [4] [5] "recipe" - "workflow_variables" [5] [6] "recipe" - "workflow_variables" [6] [7] "workflow_variables" - "recipe" [7] [8] "workflow_variables" - "recipe" [8] [ FAIL 1 | WARN 0 | SKIP 1 | PASS 1 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-Accelerate/viralmodels.Rcheck/00check.log’ for details. 45.05 real 40.09 user 4.00 sys