* using log directory ‘/Users/ripley/R/packages/tests-Accelerate/sn.Rcheck’ * using R Under development (unstable) (2023-09-17 r85158) * using platform: aarch64-apple-darwin22.6.0 * R was compiled by Apple clang version 15.0.0 (clang-1500.0.40.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.5.2 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘sn/DESCRIPTION’ ... OK * this is package ‘sn’ version ‘2.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sn’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... ERROR Running examples in ‘sn-Ex.R’ failed The error most likely occurred in: > ### Name: plot.selm > ### Title: Diagnostic plots for 'selm' fits > ### Aliases: plot.selm plot.mselm plot,selm-method plot,mselm-method > ### Keywords: hplot > > ### ** Examples > > data(wines) > # > m10 <- selm(flavanoids ~ 1, family="SN", data=wines, subset=(wine=="Barolo")) > plot(m10) > plot(m10, which=c(1,3)) # fig 3.1 and 3.2(a) of Azzalini and Capitanio (2014) > # > m18 <- selm(acidity ~ sugar + nonflavanoids + wine, family="SN", data=wines) Warning in rq.fit.br(wx, wy, tau = tau, ...) : Solution may be nonunique > plot(m18) > plot(m18, param.type="DP") > # > m28 <- selm(cbind(acidity, alcohol) ~ sugar + nonflavanoids + wine, + family="SN", data=wines) > plot(m28, col=4) > # > data(ais) > m30 <- selm(cbind(RCC, Hg, Fe) ~ 1, family="SN", data=ais) Error in nlminb(param, msn.dev, msn.dev.grad, control = control, x = x, : NA/NaN gradient evaluation Calls: selm -> selm.fit -> msn.mle -> nlminb Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-Accelerate/sn.Rcheck/00check.log’ for details. 35.18 real 31.22 user 3.24 sys