* using log directory ‘/Users/ripley/R/packages/tests-Accelerate/hyperSpec.Rcheck’
* using R Under development (unstable) (2023-09-17 r85158)
* using platform: aarch64-apple-darwin22.6.0
* R was compiled by
    Apple clang version 15.0.0 (clang-1500.0.40.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.5.2
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘hyperSpec/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘hyperSpec’ version ‘0.100.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hyperSpec’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) palettes.Rd:25: Escaped LaTeX specials: \#
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Documented arguments not in \usage in documentation object 'scan.txt.Witec':
  ‘nwl’ ‘remove.zerospc’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘unittests.R’
 ERROR
Running the tests in ‘tests/unittests.R’ failed.
Complete output:
  > library (testthat)
  > test_check("hyperSpec")
  Loading required package: hyperSpec
  Loading required package: lattice
  Loading required package: grid
  Loading required package: ggplot2
  Loading required package: xml2
  Package hyperSpec, version 0.100.0
  
  To get started, try
     vignette ("hyperspec")
     package?hyperSpec 
     vignette (package = "hyperSpec")
  
  If you use this package please cite it appropriately.
     citation("hyperSpec")
  will give you the correct reference.
  
  The project homepage is http://hyperspec.r-forge.r-project.org
  
  
  [ FAIL 4 | WARN 0 | SKIP 62 | PASS 328 ]
  
  ══ Skipped tests (62) ══════════════════════════════════════════════════════════
  • TODO: implement (1): ???
  • empty test (4): 'test-attached.R:6:1', 'test-attached.R:6:1',
    'test-attached.R:6:1', 'test-plotspc.r:3:1'
  • file import test files not installed (55): ???, ???, ???, ???, ???, ???, ???,
    ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???,
    ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???,
    ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???, ???,
    ???, ???, ???
  • no spc files with empty spectra available so far (1): ???
  • skip (1): ???
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure (???): spline interpolation ─────────────────────────────────────────
  all(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure (???): edge treatment and debuglevel ────────────────────────────────
  all(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  debuglevel = 0, range = 405`~`407
  ── Failure (???): edge treatment and debuglevel ────────────────────────────────
  all(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  debuglevel = 1, range = 405`~`407
  ── Failure (???): edge treatment and debuglevel ────────────────────────────────
  all(...) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  debuglevel = 2, range = 405`~`407
  
  [ FAIL 4 | WARN 0 | SKIP 62 | PASS 328 ]
  Deleting unused snapshots:
  • attached/plot-1-fill.svg
  • attached/plot-1-rev.svg
  • attached/plot-c.svg
  • attached/plot-depth.svg
  • attached/plot-map.svg
  • attached/plot-mat-contour.svg
  • attached/plot-mat.svg
  • attached/plot-spc.svg
  • attached/plot-spcmeansd.svg
  • attached/plot-spcprctile.svg
  • attached/plot-spcprctl5.svg
  • attached/plot-ts.svg
  • attached/plot-voronoi.svg
  • attached/plot.svg
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [48s/50s] OK
* checking PDF version of manual ... OK
* checking HTML version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/Users/ripley/R/packages/tests-Accelerate/hyperSpec.Rcheck/00check.log’
for details.

       97.43 real        81.77 user        12.47 sys