* using log directory ‘/Users/ripley/R/packages/tests-Accelerate/gamlss.spatial.Rcheck’ * using R Under development (unstable) (2023-09-17 r85158) * using platform: aarch64-apple-darwin22.6.0 * R was compiled by Apple clang version 15.0.0 (clang-1500.0.40.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.5.2 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘gamlss.spatial/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gamlss.spatial’ version ‘2.0.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gamlss.spatial’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in ‘gamlss.spatial-Ex.R’ failed The error most likely occurred in: > ### Name: gamlss.gmrf > ### Title: Gaussian Markov Random Field fitting within GAMLSS > ### Aliases: gamlss.gmrf gmrf > ### Keywords: regression spatial > > ### ** Examples > > library(gamlss) > library(mgcv) > data(columb) > data(columb.polys) > vizinhos=polys2nb(columb.polys) > precisionC <- nb2prec(vizinhos,x=columb$district) > # MRFA > m1<- gamlss(crime~ gmrf(district, polys=columb.polys, method="Q"), data=columb) Error in .chol.spam.basis(x, pivot = pivot, memory = memory, eps = eps, : Singularity problem when calculating the Cholesky factor. Calls: gamlss ... solve -> solve -> .local -> chol.spam -> .chol.spam.basis Execution halted * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-Accelerate/gamlss.spatial.Rcheck/00check.log’ for details. 30.63 real 25.71 user 3.61 sys