* using log directory ‘/Users/ripley/R/packages/tests-Accelerate/EBglmnet.Rcheck’ * using R Under development (unstable) (2023-09-17 r85158) * using platform: aarch64-apple-darwin22.6.0 * R was compiled by Apple clang version 15.0.0 (clang-1500.0.40.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.5.2 * using session charset: UTF-8 * using option ‘--no-stop-on-test-error’ * checking for file ‘EBglmnet/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘EBglmnet’ version ‘6.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EBglmnet’ can be installed ... OK * used C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ * used SDK: ‘MacOSX14.0.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... ERROR Running examples in ‘EBglmnet-Ex.R’ failed The error most likely occurred in: > ### Name: EBglmnet > ### Title: Main Function for the EBglmnet Algorithms > ### Aliases: EBglmnet > > ### ** Examples > > > rm(list = ls()) > library(EBglmnet) > #Use R built-in data set state.x77 > y= state.x77[,"Life Exp"] > xNames = c("Population","Income","Illiteracy", "Murder","HS Grad","Frost","Area") > x = state.x77[,xNames] > # > #Gaussian Model > #lassoNEG prior as default > out = EBglmnet(x,y,hyperparameters=c(0.5,0.5)) BLAS error: Parameter number 6 passed to cblas_daxpy had an invalid value * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * checking HTML version of manual ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR See ‘/Users/ripley/R/packages/tests-Accelerate/EBglmnet.Rcheck/00check.log’ for details. 16.50 real 9.39 user 3.38 sys