* installing *source* package ‘profdpm’ ... ** package ‘profdpm’ successfully unpacked and MD5 sums checked ** libs clang -mtune=native -I/Users/ripley/R/R-clang/include -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c methods.c -o methods.o methods.c:125:9: warning: variable 'del' is uninitialized when used here [-Wuninitialized] del -= obj->logponly( obj, only, 1 ); ^~~ methods.c:113:15: note: initialize the variable 'del' to silence this warning double del; ^ = 0.0 1 warning generated. clang -mtune=native -I/Users/ripley/R/R-clang/include -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c pci.c -o pci.o clang -mtune=native -I/Users/ripley/R/R-clang/include -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c pdpmbm.c -o pdpmbm.o clang -mtune=native -I/Users/ripley/R/R-clang/include -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c pdpmlm.c -o pdpmlm.o pdpmlm.c:108:13: warning: variable 'accu' is uninitialized when used here [-Wuninitialized] accu += pow(obj->gcl[ cls ], obj->lam); ^~~~ pdpmlm.c:99:22: note: initialize the variable 'accu' to silence this warning double logp, accu; ^ = 0.0 1 warning generated. clang -mtune=native -I/Users/ripley/R/R-clang/include -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c profBinary.c -o profBinary.o profBinary.c:45:12: warning: assigning to 'unsigned int *' from 'int *' converts between pointers to integer types with different sign [-Wpointer-sign] mdl->y = INTEGER(y); ^ ~~~~~~~~~~ profBinary.c:53:43: warning: inequality comparison result unused [-Wunused-comparison] if( elem == R_NilValue ) { obj->flags != FLAG_DIRICHL; obj->lam = 0; } ~~~~~~~~~~~^~~~~~~~~~~~~~~ profBinary.c:53:43: note: use '|=' to turn this inequality comparison into an or-assignment if( elem == R_NilValue ) { obj->flags != FLAG_DIRICHL; obj->lam = 0; } ^~ |= 2 warnings generated. clang -mtune=native -I/Users/ripley/R/R-clang/include -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c profLinear.c -o profLinear.o clang -mtune=native -I/Users/ripley/R/R-clang/include -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -Wconversion -Wno-sign-conversion -c util.c -o util.o clang -mtune=native -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o profdpm.so methods.o pci.o pdpmbm.o pdpmlm.o profBinary.o profLinear.o util.o -L/Users/ripley/R/R-clang/lib -lRlapack -L/Users/ripley/R/R-clang/lib -lRblas -L/usr/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/lib -lgfortran -L/Users/ripley/R/R-clang/lib -lR -dylib_file libRblas.dylib:/Users/ripley/R/R-clang/lib/libRblas.dylib -Wl,-framework -Wl,CoreFoundation installing to /Users/ripley/R/packages/tests-clang/profdpm.Rcheck/profdpm/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘profdpm.Rnw’ ** testing if installed package can be loaded * DONE (profdpm)