Research Students

Research students
     
Fadhel Ayed
Supervisor: François Caron
Fergus Boyles
Oxford Protein Informatics Group
Supervisors: Garrett Morris and Charlotte Deane
Systems Biology CDT
Lyuba Bozhilova
Oxford Protein Informatics Group
Confidence in protein interaction networks
Supervisors: Gesine Reinert and Charlotte Deane
Systems Approaches to Biomedical Sciences CDT
Christian Carmona Perez
Supervisor: Geoff Nicholls
Ryan Christ Ancestral tree as weighted networks: applications in genome-wide association and selection scans
Supervisors: Chris Holmes and David Steinsaltz
Mathias Cronjager

Evolutionary Bioinformatics Group
Scaleable Monte Carlo Methods for sequence data related by coalescent models
Supervisor: Jotun Hein
Statistical Science (EPSRC and MRC Centre for Doctoral Training)

Jimi Cullen
Evolutionary Bioinformatics Group
Stochastic models of evolutions of multigene famies by gain and loss
Supervisors: Jotun Hein and Peter Holland
Systems Biology CDT
Laura Depner
Oxford Protein Informatics Group
Improving biologically inspired protein structure prediction
Supervisors: Charlotte Deane, Saulo Oliviera and Jiye Shi
Systems Approaches to Biomedical Sciences CDT
Giuseppe di Benedetto
OxCSML
Robust Bayesian approaches to scalable inference for biomedical applications
Supervisors: François Caron and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Bo Fan
Probability Group
Ageing of complex systems modelled by interdependency networks
Supervisor: David Steinsaltz
Tamara Fernandez Aguilar
Gaussian process for survival analysis
Supervisor: Yee Whye Teh
Christopher Gill
Statistical Genomics
Statistical methods for direct-to-consumer genetic testing
Supervisors: Jonathan Marchini and Simon Myers
Systems Approaches to Biomedical Sciences CDT
Michael Golden Evolutionary Bioinformatics Group
Evolutionary analysis of biological structures
Supervisor: Jotun Hein
Mitch Gooding
Probability Group
Calculation of moments of competing Super Brownian motion
Supervisor: Alison Etheridge
Frauke Harms
OxCSML
Bayesian nonparametrics
Supervisor: Yee Whye Teh
Leonard Hasenclever
OxCSML
Large-scale Bayesian learning
Supervisor: Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Alexander Homer
Probability Group
Supervisor: Christina Goldschmidt
Hyun Jik Kim
OxCSML
Scalable applications of Gaussian processes
Supervisor:Yee Whye Teh
Mikolaj Kasprzak
Probability Group
Stein's method for functional approximation
Supervisor: Gesine Reinert
Adam Kay
Properties of the Arboreal Fourier Transform
Supervisor: Colin McDiarmid
Joyce Klu
Opinion dynamics on evolving social networks: towards modelling the effect of added new information
Supervisor: Gesine Reinert
Aleksandr Kovaltsuk
Oxford Protein Informatics Group
Supervisor: Charlotte Deane
Interdisciplinary Bioscience DTP
Eleanora Kreacic
Probability Group
Transmission of information and random matchings on the complete graph
Supervisors: Christina Goldschmidt and James Martin
William Larsen
Evolutionary Bioinformatics Group
Supervisor: Jotun Hein
Eleanor Law
Oxford Protein Informatics Group
Computational studies of structural motifs and co-translational folding mechanisms of membrane and soluble proteins
Supervisors: Charlotte Deane and Jiye Shi
Systems Approaches to Biomedical Sciences CDT
Leon Law
OxCSML
Scalable and model-driven kernel methods
Supervisors: Dino Sejdinovic, Yee Whye Teh and Christopher Yau (University of Bristol)
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Susan Leung
Oxford Protein Informatics Group
Fragment-based drug discovery for inhibitors of the PHIP (2) bromodomain
Supervisors: Garrett Morris
Systems Approaches to Biomedical Sciences CDT
Zhu Li
An analysis of prison study through the bivariate negative binomial model and the Bayesian hierarchical model
Supervisors:Dino Sejdinovic and  David Steinsaltz
Thibaut Lienart
OxCSML
The choice of normalization in generalized two-filter smoothing and links with belief propagation
Supervisors: Arnaud Doucet and Yee Whye Teh
Malte Luecken
Oxford Protein Informatics Group
Application of multi-resolution partitioning of interaction networks to the study of complex disease
Supervisors: Gesine Reinert and Charlotte Deane
Xiaoyu  Lu
OxCSML
Tucker Gaussian processes and relativistic Monte Carlo
Supervisor: Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Simon Lyddon
OxCSML
Robust Bayesian approaches to scalable inference for biomedical applications
Supervisor: Chris Holmes
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Christopher Maddison
OxCSML
Supervisors: Yee Whye Teh and Arnaud Doucet
Kaspar Martens
OxCSML
Supervisors: Dino Sejdinovic and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Lawrence Middleton
Scaling particle Markov chain Monte Carlo for high-dimensional state-space models
Supervisors: Arnaud Doucet, Chris Holmes and Anthony Lee (University of Warwick)
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Xenia Miscouridou
OxCSML
Sparse dynamic network models
Supervisors: François Caron and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Jovana Mitrovic
OxCSML
Deep kernel machines
Supervisors: Dino Sejdinovic and Yee Whye Teh
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Gurjinder Singh Mohan
Dynamic longitudinal survival analysis
Supervisor: David Steinsaltz
Jaroslaw Nowak
Oxford Protein Informatics Group
Understanding antibody binding sites
Supervisors: Charlotte Deane and Sebastian Kelm
Systems Approaches to Biomedical Sciences CDT
Luis Ospina Forero
Oxford Protein Informatics Group
Modelling the ego-networks of protein-protein interaction networks
Supervisors: Gesine Reinert and Charlotte Deane
Hannah Patel

Oxford Protein Informatics Group
Novelty score: prioritising compountds that are novel scaffolds or form novel protein-ligand interactions using an interaction centric approach
Supervisors: Charlotte Deane and Garrett Morris
Systems Approaches to Biomedical Sciences CDT
Cristian Regep
Oxford Protein Informatics Group
Using structural fragments to design antibody binding sites
Supervisors: Charlotte Deane and Sebastian Kelm
Systems Approaches to Biomedical Sciences CDT
Mark Roeling
Supervisor: Geoff Nicholls
Dane Rogers
Probability Group
Evolution of (α,θ) - strings of beads
Supervisor: Matthias Winkel
Simone Rubinacci
Statistical Genomics
Haplotype phasing using the UK Biobank resource
Supervisor: Jonathan Marchini
Systems Biology CDT
Tammo Rukat
OxCSML
Statistical machine learning for genomics
Supervisors: Chris Yau (University of Bristol) and Chris Holmes
Systems Approaches to Biomedical Sciences CDT
Sebastian Schmon
OxCSML
Methodology and analysis of pseudo-marginal Metropolis-Hastings algorithms
Supervisor: Arnaud Doucet
Aaron Smith
Probability Group
Supervisor: Alison Etheridge
Leo Speidel
Inference of ancestral recombination graphs from DNA sequence data
Supervisor: Simon Myers
Systems Biology CDT
Roman Stasinski
Probability Group
Supervisors: Julien Berestycki and James Martin
Tjun Kiat Teo Classification of partially labelled data using 'Mixture of Experts' Models
Supervisor: Brian Ripley
Owen Thomas
Scalable Gaussian processes for case-control analysis
Supervisor: Chris Holmes
Paul Vanetti
On novel particle MCMC methods
Supervisor: Arnaud Doucet
Statistical Science (EPSRC and MRC Centre for Doctoral Training)
Andi Wang

Probability Group
Theoretical properties of quasistationary Monte Carlo Methods
Supervisors: David Steinsaltz and Gareth Roberts (University of Warwick)
Statistical Science (EPSRC and MRC Centre for Doctoral Training)

Fan Wang
Probability Group
Computing Lyapunov exponent for products of random matrices
Supervisor: David Steinsaltz
Clare West
Oxford Protein Informatics Group
Investigating the different folding mechanisms for proteins
Supervisors: Charlotte Deane, Saulo Pires de Oliveira and Jiye Shi
Systems Approaches to Biomedical Sciences CDT
Matthew Willetts
OxCSML
Supervisor: Chris Holmes
Systems Biology CDT
Dominic Yeo
Probability Group
Self-organised criticality in random graph processes
Supervisors: Christina Goldschmidt and James Martin
Qinyi Zhang
OxCSML
Nonparametric association measures for large-scale hypothesis testing
Supervisors: Dino Sejdinovic and Yee Whye Teh

Oxford Warwick Statistics Programme (OxWaSP) Students 2016/2017 cohort

Virginia Aglietti
Jack Carter
Samuel Davenport
Arne Gouwy
Jeremias Knoblauch
Petya Kindalova
Tamar Loach
Giulio Morina
Emilia Pompe
Dominic Richards

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