Publications
- A.D.Barbour and G. Reinert (2011). The shortest distance in random multi-type intersection graphs. Random Structures and Algorithms, 39, 179-209.
- X. Liu, L.Wan, G. Reinert, M.S. Waterman, F. Sun, J. Li (2011). New powerful statistics for alignment-free sequence comparison under a pattern transfer model. Journal of Theoretical Biology, 284, 106-116
- W. Ali, C. Deane and G. Reinert (2011). Protein Interaction Networks and Their Statistical Analysis. Handbook of Statistical Systems Biology (eds M.P.H. Stumpf, D.J. Balding and M. Girolami), John Wiley & Sons Ltd, Chichester, UK.
- G. Reinert (2011).Gaussian approximation of functionals: Malliavin calculus and Stein's method. Surveys in Stochastic Processes (eds: J. Blath, P. Imkeller and S. Roelly), European Mathematical Society Publishing House, Zurich, pp. 107-126.
- I. Nourdin, G. Peccati and G.Reinert (2010). Stein's method and stochastic analysis of Rademacher functionals.
- I. Nourdin, G. Peccati and G. Reinert (2010). Invariance principles for homogeneous sums: universality of Gaussian Wiener chaos. The Annals of Probability 38, 1947-1985.
- G. Reinert and A. Röllin (2010). U-statistics and random subgraph counts: Multivariate normal approximation via exchangeable pairs and embedding. J. Appl. Probab. 47 (2010). In Press.
- T. Rito, Z. Wang, G. Reinert and C.M. Deane (2010). How threshold behaviour affects the use of subgraphs for network comparison. Bioinformatics, 26 (18), vi611-7.
- R. Hamer, Q. Luo, J. P. Armitage,G. Reinert and C.M. Deane (2010). i-Patch: Inter-Protein Contact Prediction using Local Network Information. Proteins 78 (13), 2781-97.
- R. Hamer, P-Y. Chen, J.P. Armitage,G. Reinert and C.M. Deane (2010). Deciphering chemotaxis pathways using cross species comparisons. BMC Systems Biology 2010, 4:3 (11 January 2010)
- Z.Y. Zhai, S.Y. Ku, Y.H. Luan, G. Reinert, M.S. Waterman and F.Z. Sun (2010). The Power of Detecting Enriched Patterns: An HMM Approach. Journal of Computational Biology, 17(4):581-592.
- G. Reinert and A. Roellin, 'Multivariate normal approximation with Stein's method of exchangeable pairs under a general linearity condition' in Annals of Probability, 37 (2009), 2150-2173
- Gesine Reinert, David Chew, Fengzhu Sun, Michael S. Waterman, 'Alignment-Free Sequence Comparison (I): Statistics and Power' in Journal of Computational Biology, 16 (2009), 1-20
- I. Nourdin, G. Peccati and G. Reinert, 'Second order Poincaré inequalities and CLTs on Wiener space' in Journal of Functional Analysis, 257 (2009), 593-609
- J.-P. Onnela, N.F. Johnson, S. Gourley, G. Reinert and M. Spagat, 'Sampling bias in systems with structural heterogeneity and limited internal diffusion' in Europhysics Letters. 85 (2009), 28001
- Pao-Yang Chen, Charlotte M. Deane and Gesine Reinert, 'Predicting and Validating Protein Interactions Using Network Structure' in PLoS Computational Biology, 4 (2008), e1000118
- G Reinert, M.S. Waterman (2008). On the length of the longest exact position match in Markov sequence. IWAP (International Workshop on Applied Probability) 2008 Conference Proceedings, to appear. Pdf file. Extended version
- P. Eichelsbacher and G. Reinert, 'Stein's method for discrete Gibbs measures' in The Annals of Probability, 18 (2008), --1618
- Johnson, N.F., Spagat, M., Gourley, S., Onnela, J.P., Reinert, G. (2008). Bias in epidemiological studies of conflict mortality. Journal of Peace Research, 45 (5), 653-663.
- Crowcroft, J., Allsop, R., Smith, A.P., Varaiya, P., Gibbens, R., Bell, M., Key, P., Borst, S., Reinert, G., Briggs, K., Mondragon, R., Zhou, S., Srikant, R., Wischik, D., Atkinson, R.J., Smith, M., Patriksson, M., Ralph, D., Kirby, H.R., Brooke, J.M., Kelly, F., Odlyzko, A., Raina, G. (2008). Optimal resource allocation for multicast sessions in multi-hop wireless networks - Discussion. Philos. T.R. Soc. A 366 (1872):2075-2092 13 Jun 2008
- Pao-Yang Chen, Charlotte M. Deane and Gesine Reinert, 'A Statistical Approach Using Network Structure in the Prediction of Protein Characteristics' in Bioinformatics, 23 (2007), 2314-2321
- G. Reinert and M.S. Waterman, 'On the length of the longest exact position match in a random sequence' in Transactions on Computational Biology and Bioinformatics, 4 (2007), 153-156
- G. Reinert and M.S. Waterman (2007). On the length of the longest exact position match in a random sequence. Transactions on Computational Biology and Bioinformatics. Vol. 4 (1), 2007, 153-156. [PDF version] See here for details of the journal. This is a recent paper on word count statistics.
- Snijders, T.A.B., Robinson, T., Atkinson, A.C., Riani, M., Gormley, I.C., Murphy, T.B., Sweeting, T., Leslie, D.S., Longford, N.T., Kent, J.T., Lawrance, T., Airoldi, E.M., Besag, J., Blei, D., Fienberg, S.E., Breiger, R., Butts, C.T., Doreian, P., Batageli, V., Ferligoj, A., Draper, D., van Duijn M.A.J., Faust, K., Petrescu-Prahova, M., Forster, J.J., Gelman, A., Goodreau, S.M., Greenwood, P.E., Gruenberg, K., Francis, B., Hennig, C., Hoff, P.D., Hunter, D.R., Husmeier, D., Glasbey, C., Krackhardt, D., Kuha, J., Skrondal, A., Lawson, A., Liao, T.F., Mendes, B., Draper, D., Reinert, G., Richardson, S., Lewin, A., Titterington, D.M., Wasserman, S., Werhil, A.V., Ghazal, P. (2007). Discussion on the paper by Handcock, Raftery and Tantrum.J. Roy. Stat. Soc. A STA 170:322-354 Feb 2007
- L. Goldstein and G. Reinert. Distributional transformations, orthogonal polynomials, and Stein characterizations. Journal of Theoretical Probability, 18 (2005), 185-208. [PDF version]
This paper also appeared in Russian translation, Obozr. Prikl. Prom. Mat., (OP&PM Surveys in Applied and Industrial Mathematics) 2006, v. 13, No. 1, pp. 28—50.
- L. Goldstein and G. Reinert (2005). Zero biasing in one and higher dimensions, and applications. In: Proceedings of the conference in honor of Charles Stein, A.D. Barbour, L.H.Y. Chen, eds. World Scientific, Singapore (2005), 1-18. Last draft: Pdf file
- G. Reinert (2005). Three general approaches to Stein's method. In: A Program in Honour of Charles Stein: Tutorial Lecture Notes. A.D. Barbour, L.H.Y. Chen, eds. World Scientific, Singapore (2005), 183-221. [PDF version]
- G. Reinert, S. Schbath, and M.S. Waterman (2005). Probabilistic and Statistical Properties of Finite Words in Finite Sequences. In: Lothaire: Applied Combinatorics on Words, Cambridge University Press, J. Berstel, D. Perrin, eds., 268-352. [Postscript version]
- S. Holmes and G. Reinert (2004). Stein's method for the bootstrap. In: Stein's Method: Expository Lectures and Applications. IMS Lecture Notes 46, Hayward, P. Diaconis and S. Holmes, eds., 95-133. Pdf
- M. Huber and G. Reinert (2004). The stationary distribution in the antivoter model: Exact Sampling and Approximations. In: Stein's Method: Expository Lectures and Applications. IMS Lecture Notes 46, Hayward, P. Diaconis and S. Holmes, eds. 79-93. Postscript
- A.D. Barbour and G. Reinert (2003). Small world networks. Extended abstract for MaPhySto and Dynstoch Workshop on Dynamical Stochastic Modelling in Biology, Copenhagen 2003. Pdf file.
- G. Reinert (1999). An introduction to Stein's method and application to empirical measures.In Modelos Estocasticos. M. Gonzalez and L.G. Gorostiza, eds., Sociedad Matematica Mexicana, 65-120. (Proceedings of the Symposium of Probability and Stochastic Processes, Guanajuato, Mexico). Postscript. Pdf file
- G. Reinert and S. Schbath (1999). Compound Poisson approximations for occurences of multiple words. In Statistics in Molecular Biology and Genetics. F. Seiller-Moiseiwitsch, ed., IMS Lecture Notes, Providence, 257-275. Postscript.